.(2024). "Caracterización de mutantes sanA durante la deficiencia de LTGs en Vibrio cholerae".
"Caracterización de mutantes sanA durante la deficiencia de LTGs en Vibrio cholerae"
Thesis
Alejandro Reyes Muñoz
Alejandro Reyes Muñoz
Philosophiae Doctoris In Scientiis Biologicis Et Medicis
a.reyes @uniandes.edu.co
Profesor Asociado
- : A5005624489
- Research Gate
- Orcid
- Google Scholar
- Scopus
- CvLAC
- Website
Departamento de Ciencias Biológicas
Profile
Recent Courses
- 2024
BIOINFORMATICA
Second period
Master Level
EBI BIOINFORMATICS TOOLS
Second period
Master Level
Recent Products
.(2024). Comparative mitogenomic analysis of Rhizoctonia anastomosis groups.
Comparative mitogenomic analysis of Rhizoctonia anastomosis groups
Thesis
Recent Degrees
Philosophiae Doctoris In Scientiis Biologicis Et Medicis
Doctoral degree
University Of Washington
2013
Estados Unidos
Magíster En Ciencias Biológicas: Área Microbiología
Master degree
Universidad De Los Andes, Colombia
2005
Colombia
Recent Projects
- 2024
- Microbiota de abejas sociales
Duration: 4 months
PR.6.2024.10747
This project aims to explore the dynamics of the symbiosis between neotropical and temperate bumblebees and the microorganisms that inhabit their guts. Examining biogeographical patterns and their impact on microbial traits. We want to investigate how the host's life history and ecology might influence the microbial communities (bacterial) gut symbionts, exploring functional potential and climate change impacts on microbiome biogeography. Lastly, we'll touch upon the thermal tolerance of temperate bumble bees, contributing to a comprehensive understanding of their resilience in the face of climate change. This multifaceted exploration aims to unravel the intricate relationships between host, symbionts, and environment. We will collect about 200 bees, where most of them will be bumblebees (Bombus), but with the possibility of collecting more bees, I carry on some comparison between the different kinds of hosts.
Microbiota de muestras ambientalesDuration: 4 months
PR.6.2024.10787
Este proyecto busca caracterizar microbiota asociada a diferentes tipos de muestras ambientales. Estas pueden ser muestras fecales asociadas a diferentes especies que se encuentran en el ambiente. Se busca caracterizar la composición a través de la secuenciación del ADN bacteriano total.
Courses
- 2024
BIOINFORMATICA
Second period
Master Level
EBI BIOINFORMATICS TOOLS
Second period
Master Level
PRÁCTICA DE GRADO
Second period
Bachelor Level
INSCRIPCIÓN PROYECTO DE GRADO
Second period
Bachelor Level
INSCRIPCIÓN PROYECTO DE GRADO
Interseminal period
Bachelor Level
SEMIN.INVESTIGACIÓN DOC. L.D.2
First period
Doctoral Level
PRÁCTICA PROFESIONAL
First period
Bachelor Level
PRÁCTICA DE GRADO
First period
Bachelor Level
SEMINARIOS INVESTIGACIÓN L.D.
Second period
Master Level
BIOLOGÍA MOLECULAR AVANZADA
First period
Master Level
PROFUNDIZACIÓN INVESTIGACIÓN
Second period
Bachelor Level
ECOL.MICROB.Y HERRAM.ANA.BIOIN
First period
Master Level
ECOLOGÍA MICROBIANA
First period
Bachelor Level
TG,MONOGR,PASANTIA,EMPRENDIM
First period
Bachelor Level
PRÁCTICA PROFESIONAL
Second period
Bachelor Level
PRÁCTICA PROFESIONAL
Interseminal period
Bachelor Level
TG,MONOGR,PASANTIA,EMPRENDIM
Interseminal period
Bachelor Level
TG,MONOGR,PASANTIA,EMPRENDIM
Second period
Bachelor Level
INSCRIPCIÓN PROYECTO DE GRADO
First period
Bachelor Level
GENÓMICA
First period
Bachelor Level
SEMIN.INVESTIGACIÓN DOC. L.D.1
Second period
Doctoral Level
SEMIN.INVESTIGACIÓN DOC. L.D.2
Second period
Doctoral Level
ECOLOGÍA MICROBIANA
Second period
Bachelor Level
GENÓMICA
Second period
Bachelor Level
SEMIN.INVESTIGACIÓN DOC. L.D.1
First period
Doctoral Level
- 2023
- 2022
- 2021
- 2020
- 2019
- 2018
- 2017
- 2016
- 2015
- 2014
Products
.(2024). "Caracterización de mutantes sanA durante la deficiencia de LTGs en Vibrio cholerae".
"Caracterización de mutantes sanA durante la deficiencia de LTGs en Vibrio cholerae"
Thesis
.(2024). Comparative mitogenomic analysis of Rhizoctonia anastomosis groups.
Comparative mitogenomic analysis of Rhizoctonia anastomosis groups
Thesis
.(2024). Guards of the garden: diagnosing diseases in tomato crops in Boyacá and Cundinamarca.
Guards of the garden: diagnosing diseases in tomato crops in Boyacá and Cundinamarca
Thesis
.(2023). Analysis of ancient bacterial genomes from parchment manuscripts.
Analysis of ancient bacterial genomes from parchment manuscripts
Thesis
Reyes A. (2023)
Bacteriophages playing nice: Lysogenic bacteriophage replication stable in the human gut microbiota
iScience ()
Article
Reyes A. (2023)
Conserved, yet disruption-prone, gut microbiomes in neotropical bumblebees
mSphere ()
Article
.(2023). Draft genome assembly of a domesticated Andean Lima bean accession.
Draft genome assembly of a domesticated Andean Lima bean accession
Thesis
.(2023). Estudio de siRNA para la identificación de virus presentes en el banco de germoplasma de Achira (Canna edulis) Ker Gawl. (Cannaceae).
Estudio de siRNA para la identificación de virus presentes en el banco de germoplasma de Achira (Canna edulis) Ker Gawl. (Cannaceae)
Thesis
.(2023). Explorando el efecto de la introducción de polímeros en comunidades microbianas provenientes de suelos de manglares en el Caribe Colombiano: Un experimento con microcosmos.
Explorando el efecto de la introducción de polímeros en comunidades microbianas provenientes de suelos de manglares en el Caribe Colombiano: Un experimento con microcosmos
Thesis
Reyes A. (2023)
Genomic and Evolutionary Features of Nine AHPND Positive Vibrio parahaemolyticus Strains Isolated from South American Shrimp Farms
Microbiology spectrum ()
Article
Reyes A. (2023)
Rational Design of Profile HMMs for Sensitive and Specific Sequence Detection with Case Studies Applied to Viruses, Bacteriophages, and Casposons
Viruses-Basel (ISSN 1999-4915)
Article
.(2023). Selección dirigida de comunidades microbianas provenientes de suelo de manglar capaces de prosperar en tereftalato de polietileno (PET).
Selección dirigida de comunidades microbianas provenientes de suelo de manglar capaces de prosperar en tereftalato de polietileno (PET)
Thesis
.(2023). Towards an Ecological and Functional Framework for Modeling the Structure and Dynamics of the Human Gut Microbiome.
Towards an Ecological and Functional Framework for Modeling the Structure and Dynamics of the Human Gut Microbiome
Thesis
Varunjikar M, Moreno C, Andrade J, Tung H, Belghit I, Palmblad M, Olsvik P, Reyes A, Rasinger J, Liee K. (2022)
Comparing novel shotgun DNA sequencing and state-of-the-art proteomics approaches for authentication of fish species in mixed samples
Food Control (ISSN 0956-7135)
Article
Andrade J, Camelo L, Chica L, Forero L, Lopez-Leal G, Moreno J, Rangel G, Reyes A. (2022)
Computational Tools for the Analysis of Uncultivated Phage Genomes
Microbiology and Molecular Biology Reviews (ISSN 1092-2172)
Article
Hernandez R, Chaib M, Jimenez H, Reyes A, Caro A. (2022)
Functional and Phylogenetic Characterization of Bacteria in Bovine Rumen Using Fractionation of Ruminal Fluid
Frontiers in Microbiology (ISSN 1664-302X)
Article
.(2022). Metagenomic, metabolomic and sensorial characteristics of fermented Coffea arabica L. var. Castillo beans inoculated with microbial starter cultures.
Metagenomic, metabolomic and sensorial characteristics of fermented Coffea arabica L. var. Castillo beans inoculated with microbial starter cultures
Thesis
Lopez-Leal G, Camelo L, Hurtado-Ramirez J, Verleyen J, Castillo-Ramirez S, Reyes A. (2022)
Mining of Thousands of Prokaryotic Genomes Reveals High Abundance of Prophages with a Strictly Narrow Host Range
MSYSTEMS (ISSN 2379-5077)
Article
Matiz L, Reyes A, Anzola J. (2022)
Taxonomical Evaluation of Plant Chloroplastic Markers by Bayesian Classifier
Frontiers in Plant Science (ISSN 1664-462X)
Article
Clavijo I, Morales L, Vives M, Reyes A. (2022)
The gut microbiota of chickens in a commercial farm treated with a Salmonella phage cocktail
SCIENTIFIC REPORTS (ISSN 2045-2322)
Article
Lopez-Leal G, Reyes A, Santamaria R, Cevallos M, Perez-Monter C, Castillo-Ramirez S. (2021)
A novel vieuvirus from multidrug-resistant Acinetobacter baumannii
Archives of Virology (ISSN 0304-8608)
Article
Ayala D, Cardenas M, Guyot R, Chaib M, Bernal A, Reyes A, Restrepo S. (2021)
A whole genome duplication drives the genome evolution of Phytophthora betacei, a closely related species to Phytophthora infestans
BMC Genomics (ISSN 1471-2164)
Article
Krupovic M, Turner D, Morozova V, Dyall-Smith M, Oksanen H, Edwards R, Dutilh B, Lehman S, Reyes A, Baquero D, Sullivan MB, Uchiyama J, Nakavuma J, Barylski J, Young MJ, Du S, Alfenas-Zerbini P, Kushkina A, Kropinski A, Kurtboke I, Brister JR, Lood C, Sarkar B, Yigang T, Liuu Y, Huang L, Wittmann J, Chanishvili N, van Zyl L, Rumnieks J, Mochizuki T, Jalasvuori M, Aziz R, Lobocka M, Stedman K, Shkoporov A, Gillis A, Peng X, Enault F, Knezevic P, Lavigne R, Rhee S, Cvirkaite-Krupovic V, Moraru C, Moreno A, Poranen M, Millard A, Prangishvili D, Adriaenssens EM. (2021)
Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: update of taxonomy changes in 2021
Archives of Virology (ISSN 0304-8608)
Article
Chica L, Clavijo I, Vives M, Reyes A. (2021)
Bacterial meta-analysis of chicken cecal microbiota
PeerJ (ISSN 2167-8359)
Article
Ras V, Carvajal-Lopez P, Gopalasingam P, Matimba A, Chauke P, Mulder N, Guerfali F, Del Angel V, Reyes A, Oliveira G, De Las Rivas J, Cristancho M. (2021)
Challenges and Considerations for Delivering Bioinformatics Training in LMICs: Perspectives From Pan-African and Latin American Bioinformatics Networks
Frontiers in Education (ISSN 2504-284X)
Article
.(2021). Clasificación taxonómica rápida de organismos del reino animal basada en secuenciación de nueva generación aplicando métodos de aprendizaje de máquina.
Clasificación taxonómica rápida de organismos del reino animal basada en secuenciación de nueva generación aplicando métodos de aprendizaje de máquina
Thesis
Hufsky F, Lamkiewicz K, Almeida A, Aouacheria A, Bateman A, Baumbach J, Beerenwinkel N, Brandt C, Cacciabue M, Chuguransky S, Drechsel O, Finn R, Fritz A, Fuchs S, Hattab G, Hauschild A, Heider D, Hoffmann M, Holzer M, Hoops S, Kaderali L, Kalvari I, von Kleist M, Kmiecinski R, Kuhnert D, Lasso G, Libin P, List M, Lochel H, Martin MJ, Martin R, Matschinske J, Mchardy A, Mendes P, Mistry J, Navratil V, Nawrocki E, O'Toole A, Palacios-Ontiveros N, Petrov A, Rangel G, Redaschi N, Reimering S, Reinert K, Reyes A, Richardson L, Robertson D, Sadegh S, Singer J, Theys K, Upton C, Welzel M, Williams L, Marz M. (2021)
Computational strategies to combat COVID-19: Useful tools to accelerate SARS-CoV-2 and coronavirus research
Briefings in Bioinformatics (ISSN 1467-5463)
Article
Vasquez A, Reyes A, Duitama J, Gonzalez A. (2021)
Discovery of new potential CDK2/VEGFR2 type II inhibitors by fragmentation and virtual screening of natural products
Journal of Biomolecular Structure and Dynamics (ISSN 0739-1102)
Article
Hernandez R, Jimenez H, Vargas C, Caro A, Reyes A. (2021)
Disentangling the Complexity of the Rumen Microbial Diversity Through Fractionation Using a Sucrose Density Gradient
Frontiers in Microbiology (ISSN 1664-302X)
Article
.(2021). Estimating the andean bear diet through DNA metabarcoding and its relationships to the gut microbiome.
Estimating the andean bear diet through DNA metabarcoding and its relationships to the gut microbiome
Thesis
.(2021). Estudio de la Diversidad Microbiana del Rumen en Ganado Colombiano con Enfasis en Virus y Bacterias.
Estudio de la Diversidad Microbiana del Rumen en Ganado Colombiano con Enfasis en Virus y Bacterias
Thesis
Rangel G, Millard A, Michniewski S, Scanlan D, Siren K, Reyes A, Petersen B, Clokie M, Sicheritz-Ponten T. (2021)
From Trees to Clouds: PhageClouds for Fast Comparison of ∼640,000 Phage Genomic Sequences and Host-Centric Visualization Using Genomic Network Graphs
PHAGE: Therapy, Applications, and Research (ISSN 2641-6530)
Article
Gradaschi V, Payaslian F, Dieterle M, Rondon L, Urdaniz E, Di Paola M, Peña J, Zon F, Allievi M, Sosa E, Fernandez D, Dunne M, Goeller P, Klumpp J, Raya R, Reyes A, Piuri M. (2021)
Genome Sequence and Characterization of Lactobacillus casei Phage, vB_LcaM_Lbab1 Isolated from Raw Milk
PHAGE: Therapy, Applications, and Research (ISSN 2641-6530)
Article
Moreno J, Reyes A. (2021)
Informative regions in viral genomes
Viruses-Basel (ISSN 1999-4915)
Article
Payaslian F, Gradaschi V, Rondon L, Dieterle M, Urdaniz E, Di Paola M, Peña J, Zon F, Sosa E, Fernandez D, Dunne M, Goeller P, Klumpp J, Raya R, Reyes A, Piuri M. (2021)
Isolation and Characterization of vB_MsmS_Celfi: A New Mycobacterium tuberculosis Bacteriophage
PHAGE: Therapy, Applications, and Research (ISSN 2641-6530)
Article
Restrepo L, Dominguez-Borbor C, Bajana L, Betancourt I, Bayot B, Reyes A. (2021)
Microbial community characterization of shrimp survivors to AHPND challenge test treated with an effective shrimp probiotic (Vibrio diabolicus)
Microbiome (ISSN 2049-2618)
Article
.(2021). Molecular mechanisms of microbial interaction and effects on host health related to acute hepatopancreatic necrosis disease in shrimp.
Molecular mechanisms of microbial interaction and effects on host health related to acute hepatopancreatic necrosis disease in shrimp
Thesis
Quiroga C, Chica L, Ramirez M, Reyes A, González C, Stevenson P. (2021)
Monitoring the variation in the gut microbiota of captive woolly monkeys related to changes in diet during a reintroduction process
SCIENTIFIC REPORTS (ISSN 2045-2322)
Article
.(2021). Neotropical host conserved, yet disruption-prone gut Microbiota.
Neotropical host conserved, yet disruption-prone gut Microbiota
Thesis
Vasquez A, Reyes A, Duitama J, Gonzalez A. (2021)
Non-extensive fragmentation of natural products and pharmacophore-based virtual screening as a practical approach to identify novel promising chemical scaffolds
FRONTIERS IN CHEMISTRY (ISSN 2296-2646)
Article
Dutilh B, Varsani A, Yigang T, Simmonds P, Sabanadzovic S, Rubino L, Roux S, Reyes A, Lood C, Lefkowitz E, Kuhn J, Krupovic M, Edwards R, Brister JR, Adriaenssens EM, Sullivan M. (2021)
Perspective on taxonomic classification of uncultivated viruses
Current Opinion in Virology (ISSN 1879-6257)
Article
.(2021). Reconstrucción de genomas bacterianos simbióticos de Drosophila utilizando datos metagenómicos.
Reconstrucción de genomas bacterianos simbióticos de Drosophila utilizando datos metagenómicos
Thesis
Moore B, Carvajal-Lopez P, Chauke P, Cristancho M, Del Angel V, Fernandez-Valverde S, Ghouila A, Gopalasingam P, Guerfali F, Matimba A, Morgan S, Oliveira G, Ras V, Reyes A, De Las Rivas J, Mulder N. (2021)
Ten simple rules for organizing a bioinformatics training course in low- and middle-income countries
PLoS Computational Biology (ISSN 1553-734X)
Article
Payaslian F, Gradaschi V, Rondon L, Dieterle M, Urdaniz E, Di Paola M, Zon F, Allievi M, Sanchez C, Raya R, Reyes A, Piuri M. (2021)
Tightening Bonds in Latin America Through Phage Discovery
PHAGE: Therapy, Applications, and Research (ISSN 2641-6530)
Article
Molina J, Montes Z .(2020). A Computational Approach for the Prediction of Relevant Chemosensory proteins in a Broad Range of Insect Taxa.
A Computational Approach for the Prediction of Relevant Chemosensory proteins in a Broad Range of Insect Taxa
Thesis
Garcia A, Corrales-Agudelo V, Reyes A, Escobar J. (2020)
Diet quality, food groups and nutrients associated with the gut microbiota in a nonwestern population
Nutrients (ISSN 2072-6643)
Article
Pacheco M, Davila-Mora L, Botero-Rute L, Reyes A, Caro A. (2020)
Fine Resolution Analysis of Microbial Communities Provides Insights Into the Variability of Cocoa Bean Fermentation
Frontiers in Microbiology (ISSN 1664-302X)
Article
Botero D, Monk J, Rodriguez M, Rodriguez A, Restrepo M, Bernal V, Reyes A, Gonzalez A, Palsson B, Restrepo S, Bernal A. (2020)
Genome-Scale Metabolic Model of Xanthomonas phaseoli pv. manihotis: An Approach to Elucidate Pathogenicity at the Metabolic Level
Frontiers in Genetics (ISSN 1664-8021)
Article
Reyes A, Vives M. (2020)
Paving the way to unveil the diversity and evolution of phage genomes
Viruses-Basel (ISSN 1999-4915)
Article
Chica L .(2019). Bacterial meta-analysis of chicken cecal microbiota.
Bacterial meta-analysis of chicken cecal microbiota
Thesis
Posada C.E. , Ramirez-Rojas A, Porras P, Adu-Oppong B, Botero-coy A, Hernandez F, Anzola J, Diaz L, Dantas G, Reyes A, Zambrano M. (2019)
Bogotá River anthropogenic contamination alters microbial communities and promotes spread of antibiotic resistance genes
SCIENTIFIC REPORTS (ISSN 2045-2322)
Article
Diaz J, Posada L, Acosta I, Ruiz C, Garcia C, Reyes A, Zambrano M. (2019)
Computational search for UV radiation resistance strategies in Deinococcus swuensis isolated from Paramo ecosystems
PLoS ONE (ISSN 1932-6203)
Article
Amann R, Baichoo S, Blencowe B, Bork P, Borodovsky M, Brooksbank C, Chain P, Colwell R, Daffonchio D, Danchin A, de Lorenzo V, Dorrestein P, Finn R, Fraser C, Gilbert J, Hallam S, Hugenholtz P, Ioannidis J, Jansson J, Kim J, Klenk H, Klotz M, Knight R, Konstantinidis K, Kyrpides N, Mason C, Mchardy A, Meyer F, Ouzounis C, Patrinos A, Podar M, Pollard K, Ravel J, Reyes A, Roberts R, Rossello-Mora R, Sansone S, Schloss P, Schriml L, Setubal J, Sorek R, Stevens R, Tiedje J, Turjanski A, Tyson G, Ussery D, Weinstock G. M., White O, Whitman W, Xenarios I. (2019)
Consent insufficient for data release−Response
Science (ISSN 0036-8075)
Article
Andrade J, Moreno J, Reyes A. (2019)
Defining a Core Genome for the Herpesvirales and Exploring their Evolutionary Relationship with the Caudovirales
SCIENTIFIC REPORTS (ISSN 2045-2322)
Article
Moreno C .(2019). ESTRATEGIA PARA IDENTIFICAR ORGANISMOS Y SU ABUNDANCIA A PARTIR DE DATOS METAGENÓMICOS DERIVADOS DE MEZCLAS DE ALIMENTOS PARA PECES.
ESTRATEGIA PARA IDENTIFICAR ORGANISMOS Y SU ABUNDANCIA A PARTIR DE DATOS METAGENÓMICOS DERIVADOS DE MEZCLAS DE ALIMENTOS PARA PECES
Thesis
Matiz L .(2019). Evaluación de Marcadores Genéticos de Plantas por medio de Clasificadores Bayesianos para su implementación en metagénomas.
Evaluación de Marcadores Genéticos de Plantas por medio de Clasificadores Bayesianos para su implementación en metagénomas
Thesis
Edwards R, Vega A, Norman H, Ohaeri M, Levi K, Dinsdale E, Cinek O, Aziz R, Mcnair K, Barr J, Bibby K, Brouns S, Cazares A, de Jonge P, Desnues C, Diaz S, Fineran P, Kurilshikov A, Lavigne R, Mazankova K, Mccarthy D, Nobrega F, Reyes A, Tapia G, Trefault N, Tyakht A, Vinuesa P, Wagemans J, Zhernakova A, Moller F, Ahmadov G, Alassaf A, Anton J, Asangba A, Billings E, Cantu V, Carlton J, Cazares D, Cho G, Condeff T, Cortes P, Cranfield M, Cuevas D, De la Iglesia R, Decewicz P, Doane M, Dominy N, Dziewit L, Elwasila B, A. Murat E, Franz C, Fu J, Garcia-Aljaro C, Ghedin E, Gulino K, Haggerty J, Head S, Hendriksen R, Hill C, Hyoty H, Ilina E, Irwin M, Jeffries T, Jofre J, Junge R, Kelley S, Mirzaei M, Kowalewski M, Kumaresan D, Leigh S, Lipson D, Lisitsyna E, Llagostera M, Maritz J, Marr L, Mccann A, Molshanski-Mor S, Monteiro S, Moreira-Grez B, Morris M, Mugisha L, Muniesa, M, Neve H, Nguyen N, Nigro O, Nilsson A, O'connell T, Odeh R, Oliver A, Piuri M, Prussin A, Qimron U, Quan Z, Rainetova P, Ramirez-Rojas A, Raya R, Reasor K, Rice G, Rossi A, Santos R, Shimashita J, Stachler E, Stene L, Strain R, Stumpf R, Torres P, Twaddle A, Ugochi M, Villagra N, Wandro S, White B, Whiteley A, Whiteson K, Wijmenga C, Zambrano M, Zschach H, Dutilh B. (2019)
Global phylogeography and ancient evolution of the widespread human gut virus crAssphage
Nature Microbiology (ISSN 2058-5276)
Article
Garcia A .(2019). Local effects and dietary patterns by food groups are important shapers of the Colombian gut microbiota.
Local effects and dietary patterns by food groups are important shapers of the Colombian gut microbiota
Thesis
Roux S, Adriaenssens EM, Dutilh B, Koonin EV, Kropinski A, Krupovic M, Kuhn J, Lavigne R, Brister JR, Varsani A, Amid C, Aziz R, Bordenstein SR, Bork P, Breitbart M, Cochrane GR, Daly RA, Desnues C, Duhaime MB, Emerson JB, Enault F, Fuhrman JA, Hingamp P, Hugenholtz P, Hurwitz BL, Ivanova NN, Labonte JM, Lee KB, Malmstrom RR, Martinez-garcia M, Mizrachi I, Ogata H, Paez-Espino D, Petit MA, Putonti C, Rattei T, Reyes A, Rodriguez-Valera F, Rosario K, Schriml L, Schulz F, Steward GF, Sullivan MB, Sunagawa S, Suttle C, Temperton B, Tringe S, Vega-Thurber R, Webster N, Whiteson K, Wilhelm SW, Wommack KE, Woyke T, Wrighton K, Yilmaz P, Yoshida T, Young MJ, Yutin N, Zeigler L, Kyrpides N, Eloe-Fadrosh EA. (2019)
Minimum information about an uncultivated virus genome (MIUVIG)
Nature Biotechnology (ISSN 1087-0156)
Article
Camelo L .(2019). Phage-host interaction prediction through nucleotide signals.
Phage-host interaction prediction through nucleotide signals
Thesis
Forero L .(2019). Pipeline design for user-friendly viral metagenomic analysis.
Pipeline design for user-friendly viral metagenomic analysis
Thesis
Amann R, Baichoo S, Blencowe B, Bork P, Borodovsky M, Brooksbank C, Chain P, Colwell R, Daffonchio D, Danchin A, de Lorenzo V, Dorrestein P, Finn R, Fraser C, Gilbert J, Hallam S, Hugenholtz P, Ioannidis J, Jansson J, Kim J, Klenk H, Klotz M, Knight R, Konstantinidis K, Kyrpides N, Mason C, Mchardy A, Meyer F, Ouzounis C, Patrinos A, Podar M, Pollard K, Ravel J, Reyes A, Roberts R, Rossello-Mora R, Sansone S, Schloss P, Schriml L, Setubal J, Sorek R, Stevens R, Tiedje J, Turjanski A, Tyson G, Ussery D, Weinstock G. M., White O, Whitman W, Xenarios I. (2019)
Toward unrestricted use of public genomic data
Science (ISSN 0036-8075)
Article
Moreno J, Chou S, Di Rienzi SC, Goodrich JK, Spector T, Bell J, Youngblut N, Hewson I, Reyes A, Ley RE. (2019)
Virome Diversity Correlates with Intestinal Microbiome Diversity in Adult Monozygotic Twins
Cell Host & Microbe (ISSN 1931-3128)
Article
Ayala D .(2018). Comparative genomics of Phytophthora betacei and Phytophthora infestans reveals genome expansion due to extensive gene duplication but not repetitive elements in a novel species..
Comparative genomics of Phytophthora betacei and Phytophthora infestans reveals genome expansion due to extensive gene duplication but not repetitive elements in a novel species.
Thesis
Diaz J .(2018). Computational search of UV radiation resistance strategies in Deinococcus swuensis, isolated from Paramo ecosystems..
Computational search of UV radiation resistance strategies in Deinococcus swuensis, isolated from Paramo ecosystems.
Thesis
Restrepo L, Reyes A, Bajaña L, Betancourt I, Bayot B. (2018)
Draft Genome Sequence of a White Spot Syndrome Virus Isolate Obtained in Ecuador
Genome Announcements (ISSN 2169-8287)
Article
Andrade J .(2018). Exploring the Caudovirales: Evaluation of their Internal Classification and Potential Relationships with the Tectiviridae.
Exploring the Caudovirales: Evaluation of their Internal Classification and Potential Relationships with the Tectiviridae
Thesis
Castro-Mejia J, Deng L, Vogensen F, Reyes A, Nielsen D. (2018)
Extraction and Purification of Viruses from Fecal Samples for Metagenome and Morphology Analyses
The Human Virome (ISBN 978-1-4939-8681-1)
Inbook
Gonzalez F, Bongaerts P, Ramirez C, Adu-Oppong B, Walljasper G, Reyes A, Sanchez J. (2018)
Holobiont diversity in a reef-building coral over its entire depth range in the mesophotic zone
Frontiers in Marine Science (ISSN 2296-7745)
Article
Borbon A .(2018). Impacts of captivity in the gut microbiota of Andean bears: Insights into diet management..
Impacts of captivity in the gut microbiota of Andean bears: Insights into diet management.
Thesis
Ulloa C .(2018). In silico RAD-Seq as a possible tool for ancestry determination: an application in Helicobacter pylori.
In silico RAD-Seq as a possible tool for ancestry determination: an application in Helicobacter pylori
Thesis
Quintanilla E, Ramirez C, Adu-Oppong B, Walljasper G, Glaeser S, Wilke T, Reyes A, Sanchez J. (2018)
Local confinement of disease-related microbiome facilitates recovery of gorgonian sea fans from necrotic-patch disease
SCIENTIFIC REPORTS (ISSN 2045-2322)
Article
Avellaneda L .(2018). Metagenomic analysis of the human gut virome in obese and lean twins and their mothers..
Metagenomic analysis of the human gut virome in obese and lean twins and their mothers.
Thesis
Pardo E .(2018). Phage-Hunting: Mapping viromes against 8000 bacterial genomes.
Phage-Hunting: Mapping viromes against 8000 bacterial genomes
Thesis
Restrepo L, Bayot B, Arciniegas S, Bajana L, Betancourt I, Panchana F, Reyes A. (2018)
PirVP genes causing AHPND identified in a new Vibrio species (Vibrio punensis) within the commensal Orientalis clade
SCIENTIFIC REPORTS (ISSN 2045-2322)
Article
Pacheco M .(2018). STUDY OF THE MICROBIOTA ASSOCIATED TO THE FERMENTATION OF COCOA BEANS IN TWO AGROECOLOGICAL ZONES FROM COLOMBIA.
STUDY OF THE MICROBIOTA ASSOCIATED TO THE FERMENTATION OF COCOA BEANS IN TWO AGROECOLOGICAL ZONES FROM COLOMBIA
Thesis
Rodriguez G, Caro A, Reyes A, Lizcano F. (2017)
Advances in gut microbiome research, opening new strategies to cope with a western lifestyle
Frontiers in Microbiology (ISSN 1664-302X)
Article
Posada C.E. .(2017). Anthropogenic Contamination Effects on the Bogotá River Resistome.
Anthropogenic Contamination Effects on the Bogotá River Resistome
Thesis
Borbon A, Reyes A, Vives M, Caballero S. (2017)
Captivity shapes the gut microbiota of Andean bears: Insights into health surveillance
Frontiers in Microbiology (ISSN 1664-302X)
Article
Buitrago F, Casallas R, Hernandez M, Reyes A, Restrepo S, Danies G. (2017)
Changing a Generation’s Way of Thinking: Teaching Computational Thinking Through Programming
Review of Educational Research (ISSN 0034-6543)
Article
Reyes A.
Computational biology and tools for uncovering hidden information from the viral dark matter
Event
Andrade J .(2017). Defining a Core Genome for the Herpesvirales and Elucidating their Evolutionary Relationship with the Caudovirales.
Defining a Core Genome for the Herpesvirales and Elucidating their Evolutionary Relationship with the Caudovirales
Thesis
Dutilh B, Whiteson K, Hall R, Reyes A. (2017)
Editorial: Virus discovery by metagenomics: The (Im)possibilities
Frontiers in Microbiology (ISSN 1664-302X)
Article
Correa C .(2017). Genome mining and comparative genomics of Actinobacteria isolated from Zipaquirá salt mine and soils in Los Nevados NNP, Colombia.
Genome mining and comparative genomics of Actinobacteria isolated from Zipaquirá salt mine and soils in Los Nevados NNP, Colombia
Thesis
Otero D .(2017). Genome mining for the identification of secondary metabolites and alternative metabolic pathway modelling in Actinobacteria isolates.
Genome mining for the identification of secondary metabolites and alternative metabolic pathway modelling in Actinobacteria isolates
Thesis
Martinez M .(2017). Graphing genomes in 2D, applications of multivariate statistics on the genomic composition.
Graphing genomes in 2D, applications of multivariate statistics on the genomic composition
Thesis
Reyes A, Alves J, Durham A, Gruber A. (2017)
Use of profile hidden Markov models in viral discovery: current insights
Advances in Genomics and Genetics (ISSN 1179-9870)
Article
Ortega O .(2016). Análisis bioinformático de metagenomas virales provenientes de diferentes biomas.
Análisis bioinformático de metagenomas virales provenientes de diferentes biomas
Thesis
Alzate J .(2016). Bioinformatics workflow and assessment of software to seek secondary metabolites in Bacteria.
Bioinformatics workflow and assessment of software to seek secondary metabolites in Bacteria
Thesis
Moreno J .(2016). Búsqueda de regiones informativas en genomas virales..
Búsqueda de regiones informativas en genomas virales.
Thesis
Reyes A.
Characterizing the human gut virome
Other
Reyes A.
Curso: Bacteriófagos como modelo para el análisis de datos biológicos a gran escala
Other
Alves J, de Oliveira A., Sandberg T, Moreno J, De Toledo M., De Moura E., Oliveira L, Durham A, Mehnert D, Zanotto P, Reyes A, Gruber A. (2016)
GenSeed-HMM: A tool for progressive assembly using profile HMMS as seeds and its application in Alpavirinae viral discovery from metagenomic data
Frontiers in Microbiology (ISSN 1664-302X)
Article
Luque G .(2016). Taxonomic Assignment of 16S rRNA Sequences Based on Fourier Analysis.
Taxonomic Assignment of 16S rRNA Sequences Based on Fourier Analysis
Thesis
Martinez M .(2015). GRAFICANDO GENOMAS EN 2D Y A TODO COLOR, APLICACIONES DE LA ESTADI?STICA MULTIVARIADA SOBRE LA COMPOSICIO?N GENO?MICA.
GRAFICANDO GENOMAS EN 2D Y A TODO COLOR, APLICACIONES DE LA ESTADI?STICA MULTIVARIADA SOBRE LA COMPOSICIO?N GENO?MICA
Thesis
Reyes A, Blanton L, Cao S, Zhao G, Manary M, Trehan I, Smith M, Wang D, Virgin H, Rohwer F, Gordon J. (2015)
Gut DNA viromes of Malawian twins discordant for severe acute malnutrition
Proceedings of the National Academy of Sciences of the United States of America (ISSN 0027-8424)
Article
Reyes A.
Retos y nuevas herramientas en el análisis del microbioma y viroma intestinal humano
Event
Karr J, Williams A, Zucker J, Raue A, Steiert B, Timmer J, Kreutz C, Wilkinson S, Allgood B, Bot B, Hoff B, Kellen M, Covert M, Stolovitzky G, Meyer P, Hu Y, Baron M, Bryson K, Barker B, Bogart E, Wang Y, Chandramohan D, Huang L, Zawack K, Shestov A, Makadia H, Decicco D, Yin A, Wang M, Li S, Swistak M, Cygan M, Kazakiewicz D, Kursa M, Korytkowski P, Plewczynski D, Yang J, Li Y, Tang H, Wang T, Liu Y, Xie Y, Xiao G, Bello J, Botero D, Cañas S, Castro J, Gomez F, Valdes I, Gonzalez L, Bernal A, Pedraza J, Restrepo S, Reyes A. (2015)
Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models
PLoS Computational Biology (ISSN 1553-734X)
Article
Barrera L .(2015). Tamizaje in silicio de moléculas biosurfactantes a partir de una librería metagenómica.
Tamizaje in silicio de moléculas biosurfactantes a partir de una librería metagenómica
Thesis
Seedorf H, Griffin N, Ridaura V, Reyes A, Cheng J, Rey F, Smith M, Simon G, Scheffrahn R, Woebken D, Spormann A, Van Treuren W, Ursell L, Pirrung M, Robbins-Pianka A, Cantarel B, Lombard V, Henrissat B, Knight R, Gordon J. (2014)
Bacteria from Diverse Habitats Colonize and Compete in the Mouse Gut
Cell (ISSN 0092-8674)
Article
Borbon A, Reyes A, Vives M, Caballero S. (2014)
COMPOSICIÓN DE LA MICROBIOTA INTESTINAL DE Tremarctos ornatus A PARTIR DE HECES‚ E IMPLICACIONES EN SU ECOLOGÍA ALIMENTARIA
IV CONGRESO COLOMBIANO DE ZOOLOGÍA X CONGRESO LATINOAMERICANO DE HERPETOLOGIA X CONGRESO DE LA SOCIEDAD LATINOAMERICANA DE ESPECIALISTAS EN MAMÍFEROS ACUÁTICOS (SOLAMAC) VII ENCUENTRO COLOMBIANO SOBRE ABEJAS SILVESTRES
Inproceeding
Lopez I, Reyes A, Restrepo S, Zambrano M, Gonzalez A. (2014)
Computational tool for in silico metagenomic screening of biosurfactants
XXVII Congreso Interamericano de Ingenieria Química.
Inproceeding
Lopez I, Reyes A, Zambrano M, Gonzalez A, Restrepo S. (2014)
Computational tool for in silico screening of biosurfactants in metagenomic libraries. ISCB-Latin American x-Meeting on Bioinformatics with BSB and SoiBio! Octuber 28-30 2014, Belo Horizonte, Brazil
Other Publication
Reyes A.
Efecto del uso de antibióticos en ambientes hospitalarios sobre las comunidades microbianas
Colciencias.
Proposal
Reyes A, Dorsett Y, Zhou Y, Tubbs A. T., Chen Bo-Ruei, Purman C, Lee Baeck-Seung, George R, Bredemeyer A.L., Dorsett D, Misulovin Z, Sodergen E, Weinstock G. M., Payton J.E., Sleckman B. P.. (2014)
HCoDES reveals chromosomal DNA ends structures with single nucleotide resolution
MOLECULAR CELL (ISSN 1097-2765)
Article
Ramirez C, Dueñas L, Calixto I, Riaño D, Reyes A, Sanchez J. (2014)
THE QUEST FOR IMMUNE SIGNALS IN BASAL METAZOANS: GENOMIC LEVEL SCREENING OF IMMUNE RESPONSE IN GORGONIAN OCTOCORALS
IV CONGRESO COLOMBIANO DE ZOOLOGÍA X CONGRESO LATINOAMERICANO DE HERPETOLOGIA X CONGRESO DE LA SOCIEDAD LATINOAMERICANA DE ESPECIALISTAS EN MAMÍFEROS ACUÁTICOS (SOLAMAC) VII ENCUENTRO COLOMBIANO SOBRE ABEJAS SILVESTRES
Inproceeding
Lim E. S., Reyes A, Martin A, Saha D, Ikumapayi U. N.A., Adeyemi M, Stine O, Skelton R, Brennan D, Mkakosya R, Manary M. J., Gordon J. I., Wang D. (2013)
Corrigendum to "Discovery of STL polyomavirus, a polyomavirus of ancestral recombinant origin that encodes a unique T antigen by alternative splicing" [Virology 436 (2) (2013) 295-303] (Erratum)
VIROLOGY (ISSN 0042-6822)
Article
Lim E. S., Reyes A, Martin A, Saha D, Ikumapayi U. N.A., Adeyemi M, Stine O, Skelton R, Brennan D, Mkakosya R, Manary M, Gordon J. I., Wang D. (2013)
Discovery of STL polyomavirus, a polyomavirus of ancestral recombinant origin that encodes a unique T antigen by alternative splicing
VIROLOGY (ISSN 0042-6822)
Article
Reyes A, Wu M, Mcnulty N, Rohwer F, Gordon J. I.. (2013)
Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut
Proceedings of the National Academy of Sciences of the United States of America (ISSN 0027-8424)
Article
Reyes A, Sandoval A, Cubillos Ruiz A, Varley K. E., Hernandez Neuta I, Samper S, Martin C, Garcia M. J., Ritacco V, Lopez L, Robledo J, Zambrano M, Mitra R. D., Del Portillo P.. (2012)
IS-seq: a novel high throughput survey of in vivo IS6110 transposition in multiple Mycobacterium tuberculosis genomes
BMC Genomics (ISSN 1471-2164)
Article
Siebrasse E. A., Reyes A, Lim E. S., Zhao G, Mkakosya R. S., Manary M. J., Gordon J. I., Wang D. (2012)
Identification of MW Polyomavirus, a Novel Polyomavirus in Human Stool
JOURNAL OF VIROLOGY (ISSN 0022-538X)
Article
Kim H, Huh J, Riles L, Reyes A, Fay J. (2012)
A noncomplementation screen for quantitative trait alleles in saccharomyces cerevisiae.
G3-GENES GENOMES GENETICS (ISSN 2160-1836)
Article
Zambrano M, Hernandez Neuta G, Hernandez Neuta I, Sandoval A, Cubillos Ruiz A, Reyes A, Del Portillo P.. (2012)
Genomic Variability of Mycobacterium tuberculosis
Understanding Tuberculosis - Deciphering the Secret Life of the Bacilli (ISBN 978-953-307-946-2)
Inbook
Reyes A, Semenkovich N. P., Whiteson K, Rohwer F, Gordon J. I.. (2012)
Going viral: nextgeneration sequencing applied to phage populations in the human gut.
NATURE REVIEWS MICROBIOLOGY (ISSN 1740-1526)
Article
Forsberg K, Reyes A, Wang B, Selleck E, Sommer M, Dantas G. (2012)
The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens
Science (ISSN 0036-8075)
Article
Goodman A. L., Kallstrom G, Faith J. J., Reyes A, Moore A, Dantas G, Gordon J. I.. (2011)
Extensive personal human gut microbiota culture collections characterized and manipulated in gnotobiotic mice
Proceedings of the National Academy of Sciences of the United States of America (ISSN 0027-8424)
Article
Reyes A, Haynes M, Hanson N, Angly F. E., Heath A. C., Rohwer F, Gordon J. I.. (2010)
Viruses in the faecal microbiota of monozygotic twins and their mothers
Nature (ISSN 0028-0836)
Article
Garcia J. C., Reyes A, Salazar M, Granja C. B.. (2009)
Differential gene expression in White Spot Syndrome Virus (WSSV)-infected naive and previously challenged Pacific white shrimp Penaeus (Litopenaeus) vannamei
AQUACULTURE (ISSN 0044-8486)
Article
Olano J, Lopez B, Reyes A, Lemos M, Correa N, Del Portillo P., Barrera L, Robledo J, Ritacco V, Zambrano M. (2007)
Mutations in DNA repair genes are associated with the Haarlem lineage of Mycobacterium tuberculosis independently of their antibiotic resistance
TUBERCULOSIS (ISSN 1472-9792)
Article
Del Portillo P., Reyes A, Salazar L, Menendez M, Garcia M. J.. (2007)
Genomics and Proteomics en Tuberculosis 2007, Palomino JC, Leão S, Ritacco V (Ed.)
Other Publication
Reyes A, Salazar M, Granja C. B.. (2007)
Temperature modifies gene expression in subcuticular epithelial cells of white spot syndrome virus-infected Litopenaeus vannamei
DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY (ISSN 0145-305X)
Article
Degrees
Philosophiae Doctoris In Scientiis Biologicis Et Medicis
Doctoral degree
University Of Washington
2013
Estados Unidos
Magíster En Ciencias Biológicas: Área Microbiología
Master degree
Universidad De Los Andes, Colombia
2005
Colombia
Microbiólogo
Bachelor degree
Universidad De Los Andes, Colombia
2004
Colombia
Projects
- 2024
- Microbiota de abejas sociales
Duration: 4 months
PR.6.2024.10747
This project aims to explore the dynamics of the symbiosis between neotropical and temperate bumblebees and the microorganisms that inhabit their guts. Examining biogeographical patterns and their impact on microbial traits. We want to investigate how the host's life history and ecology might influence the microbial communities (bacterial) gut symbionts, exploring functional potential and climate change impacts on microbiome biogeography. Lastly, we'll touch upon the thermal tolerance of temperate bumble bees, contributing to a comprehensive understanding of their resilience in the face of climate change. This multifaceted exploration aims to unravel the intricate relationships between host, symbionts, and environment. We will collect about 200 bees, where most of them will be bumblebees (Bombus), but with the possibility of collecting more bees, I carry on some comparison between the different kinds of hosts.
Microbiota de muestras ambientalesDuration: 4 months
PR.6.2024.10787
Este proyecto busca caracterizar microbiota asociada a diferentes tipos de muestras ambientales. Estas pueden ser muestras fecales asociadas a diferentes especies que se encuentran en el ambiente. Se busca caracterizar la composición a través de la secuenciación del ADN bacteriano total.
- 2021
- 2017
- 2015
- 2013